Package: HIDDA.forecasting 1.1.2

Sebastian Meyer

HIDDA.forecasting: Forecasting Based on Surveillance Data

The Handbook of Infectious Disease Data Analysis ("HIDDA") contains a chapter on "Forecasting Based on Surveillance Data". The R package 'HIDDA.forecasting' provides the data and code to reproduce results from the two applications described in that chapter (see the corresponding vignettes): Univariate forecasting of Swiss ILI counts using 'forecast', 'glarma', 'surveillance' and 'prophet', and an age-stratified analysis of norovirus gastroenteritis in Berlin using the multivariate time-series model implemented in surveillance::hhh4().

Authors:Sebastian Meyer [aut, cre], Leonhard Held [ctb]

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HIDDA.forecasting.pdf |HIDDA.forecasting.html✨
HIDDA.forecasting/json (API)
NEWS

# Install 'HIDDA.forecasting' in R:
install.packages('HIDDA.forecasting', repos = c('https://ee-lib.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/hidda/forecasting/issues

Pkgdown:https://hidda.github.io

Datasets:
  • CHILI - Swiss Surveillance Data on Influenza Like Illness, 2000-2016

On CRAN:

forecastinginfectious-diseasestime-series

4.02 score 3 stars 3 scripts 11 exports 11 dependencies

Last updated 1 years agofrom:74ca2570c8. Checks:OK: 7. Indexed: no.

TargetResultDate
Doc / VignettesOKDec 07 2024
R-4.5-winOKDec 07 2024
R-4.5-linuxOKDec 07 2024
R-4.4-winOKDec 07 2024
R-4.4-macOKDec 07 2024
R-4.3-winOKDec 07 2024
R-4.3-macOKDec 07 2024

Exports:autoplot.zoodhhh4simsdnbmixfortify.zooindexlogs_hhh4simslogs_nbmixosaplotscores_lnormscores_lnorm_discretescores_sample

Dependencies:evaluatehighrknitrlatticeMASSRcppRcppArmadilloscoringRulesxfunyamlzoo

Forecasting age-stratified norovirus gastroenteritis counts using surveillance::hhh4

Sebastian Meyer

Rendered fromBNV.Rmdusingknitr::rmarkdownon Dec 07 2024.

Last update: 2023-11-29
Started: 2018-01-18

Forecasting Swiss ILI counts using forecast::auto.arima

Sebastian Meyer

Rendered fromCHILI_arima.Rmdusingknitr::rmarkdownon Dec 07 2024.

Last update: 2023-11-08
Started: 2017-09-27

Forecasting Swiss ILI counts using glarma::glarma

Sebastian Meyer

Rendered fromCHILI_glarma.Rmdusingknitr::rmarkdownon Dec 07 2024.

Last update: 2023-11-08
Started: 2017-11-24

Forecasting Swiss ILI counts using prophet::prophet

Sebastian Meyer

Rendered fromCHILI_prophet.Rmdusingknitr::rmarkdownon Dec 07 2024.

Last update: 2023-11-08
Started: 2017-09-27

Forecasting Swiss ILI counts using surveillance::hhh4

Sebastian Meyer

Rendered fromCHILI_hhh4.Rmdusingknitr::rmarkdownon Dec 07 2024.

Last update: 2023-11-29
Started: 2017-09-27

Forecasting Swiss ILI counts using simple log-normals by calendar week

Sebastian Meyer

Rendered fromCHILI_naive.Rmdusingknitr::rmarkdownon Dec 07 2024.

Last update: 2019-03-29
Started: 2018-07-25

Swiss ILI surveillance counts

Sebastian Meyer

Rendered fromCHILI.Rmdusingknitr::rmarkdownon Dec 07 2024.

Last update: 2017-11-20
Started: 2017-09-18